In the news

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Rapid detection of Salmonella Typhimurium microcolonies using phase-contrast imaging and deep learning

Journal of Food Protection published an article entitled “Rapid detection of Salmonella Typhimurium microcolonies using phase-contrast imaging and deep learning,” J. Food Protection, 30 Sept 2026. In this study, the authors developed a rapid and automated detection framework that integrates phase-contrast microscopy with a YOLOv8x-based deep learning model to identify Salmonella enterica serovar Typhimurium at the microcolony stage. A dataset of 5,000 microscopy images, including pure and mixed cultures with Escherichia coli K-12 under both clean and food-matrix (onion) conditions, was collected across multiple time points (30 min to 4 h). The model achieved a precision of 0.891, recall of 0.867, and mAP@0.50 of 0.898. The model achieved reliable detection as early as 2 hours of incubation, significantly reducing the time required compared to conventional culture-based methods. The model also performed robustly in mixed cultures, effectively distinguishing between morphologically similar bacterial species. In addition, instance-level analysis enabled quantitative characterization of microcolony growth dynamics over time. This approach provides a rapid, accurate, and cost-effective strategy for early-stage pathogen detection and has strong potential for real-time food safety monitoring and microbial diagnostics. @ https://www.sciencedirect.com/science/article/pii/S0362028X26002395?dgcid=raven_sd_aip_email

 

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Coco G’s recalls Flaming Cheddar Hots Popcorn due to Salmonella

Coco G’s Snack Foods recalled 270 bags of Coco G’s Gourmet Flaming Cheddar Hots Popcorn due to potential Salmonella contamination. The recalled products were distributed in Illinois and Wisconsin. Coco G’s initiated the recall on May 5, 2026, and the FDA classified it as Class I on September 29, 2026. The recall is ongoing. The affected products are: 5 oz (142g) bags, UPC 6 94161 60005 8, 4.15 oz (118g) UPC 94161 38911 3, and 2.5 oz (81g) UPC 6 94161 9. All products have a Best By date of June 10, 2026. These products were distributed in Illinois and Wisconsin. The recall was initiated after it was discovered that the popcorn might be contaminated with Salmonella. https://iwaspoisoned.com/food-recall/coco-g-s-recalls-flaming-cheddar-hots-popcorn-due-to-salmonella

 

 

The CORE update for September 30, 2026

The CORE update lists 16 outbreaks and adverse event postings. A new outbreak of Listeria monocytogenes (ref #1415) linked to a not yet identified product has been added to the table. FDA has initiated traceback. A new outbreak of E. coli O26:H11 (ref #1419) linked to raw milk cheese has been added to the table. On September 25, 2026, the raw milk cheese manufacturer issued a voluntary recall. On September 25, 2026, the FDA issued an outbreak advisory and initiated traceback. This outbreak includes 13 illnesses, 8 hospitalizations, 3 HUS, and no deaths. The following states have cases:  CA, CO, GA, KY, MI, NV, OR, TN, UT. For the E. coli O157:H7 outbreak (ref #1421), the case count has increased from 25 to 38. FDA has initiated sample collection. For the Listeria monocytogenes outbreak (ref #1417), the case count has increased from 40 to 44. For the Cyclospora outbreak (ref #1392), the case count increased from 234 to 235. For the Listeria monocytogenes outbreak (ref #1379), the case count increased from 10 to 11. For the outbreak of Clostridium botulinum (ref #1383) linked to powdered infant formula, FDA’s outbreak investigation has closed. The FDA’s outbreak investigation into the Salmonella Enteritidis (ref #1378) outbreak linked to eggs has closed. @ https://www.fda.gov/food/outbreaks-foodborne-illness/investigations-foodborne-illness-outbreaks?utm_medium=email&utm_source=govdelivery

 

 

 

 

The following is a list of outbreak and adverse event investigations primarily being managed by FDA’s CORE Response Teams.

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The FDA issues warning letter to Neogen following fungal contamination in a veterinary product linked to serious infections in nearly 100 Horses

The FDA recently issued warning letters to Neogen Corporation and Sciarra Aeromed, Inc., following an investigation that linked a veterinary wound care product labeled as sterile, Neogen Vet HYCOAT (hyaluronate sodium sterile solution), to serious infections and deaths in horses. This incident involved at least 20 horse deaths, making it the largest number of horse deaths ever associated with a quality defect in an FDA-regulated veterinary medical product and the most deaths of any animal species linked to microbiological contamination of an FDA-regulated product labeled as sterile. Neogen initiated a voluntary recall of HYCOAT in late January 2026. Total fatalities reflect only those deaths reported to the FDA. The total number of affected horses only includes cases reported to the FDA with sufficient identification to confirm each as a unique case. To date, the FDA has not been informed of the final case outcome for many of the injured horses. Beginning in late 2025, the FDA received reports from veterinarians who used this product as an injection. Although the product’s label describes it as a sterile solution, the FDA’s testing found contamination with multiple fungi, including Purpureocillium lilacinum, Paraisaria heteropoda, Gongronella lacrispora, Purpureocillium sodanum, and Isaria takamizusanensis. Injecting a fungus-contaminated solution poses a significant risk to the animal. Fungi introduced into a joint can cause infection, tissue destruction, and systemic illness. Tragically, nearly 100 horses developed serious joint infections following administration of this product, and at least 20 horses were humanely euthanized after unsuccessful treatment of the infections. Purpureocillium lilacinum, one of the fungi identified in the product, is particularly resistant to antifungal drugs, making infections caused by this organism especially difficult to treat. Even when applied topically to wounds, as stated on the product label, a contaminated product labeled as sterile poses serious risks. Microorganisms introduced to an open wound can enter the bloodstream, potentially causing infection, cellulitis, tissue necrosis, and life-threatening sepsis. The FDA’s investigation into the contamination and associated injuries was extensive. The agency reviewed epidemiological and clinical evidence, collected and tested product samples, and inspected the manufacturing facility. The inspection revealed serious violations, including manufacturing products labeled as sterile in a facility with insanitary conditions. This incident underscores the importance of reporting adverse events associated with veterinary products. Neogen was marketing this product as an animal device and did not proactively report adverse events to the FDA. As a result, the agency was unaware of the emerging problem until veterinarians began contacting the FDA directly. Those voluntary reports from veterinarians were essential to triggering the FDA’s investigation. @ https://www.fda.gov/animal-veterinary/cvm-updates/fda-issues-warning-letters-following-fungal-contamination-veterinary-product-linked-serious?utm_medium=email&utm_source=govdelivery

 

 

At least 20 of the horses had to be humanely euthanized